Publications of the Signal Processing Core

Articles de journaux

The dynamic functional connectome: State-of-the-art and perspectives

M. G. Preti; T. A. W. Bolton; D. Van De Ville

Neuroimage. 2017.

DOI : 10.1016/j.neuroimage.2016.12.061.

Dynamics of functional connectivity at high spatial resolution reveal long-range interactions and fine-scale organization

M. G. Preti; D. Van De Ville

Scientific Reports. 2017.

DOI : 10.1038/s41598-017-12993-1.

Assessing the clinical outcome of Vim radiosurgery with voxel-based morphometry: visual areas are linked with tremor arrest!

C. Tuleasca; T. Witjas; E. Najdenovska; A. Verger; N. Girard et al.

Acta Neurochirurgica. 2017.

DOI : 10.1007/s00701-017-3317-7.

Inter-hemispherical asymmetry in default-mode functional connectivity and BAIAP2 gene are associated with anger expression in ADHD adults

R. Hasler; M. G. Preti; D. E. Meskaldji; J. Prados; W. Adouan et al.

Psychiatry Research-Neuroimaging. 2017.

DOI : 10.1016/j.pscychresns.2017.09.004.

Prediction of long-term memory scores in MCI based on resting-state fMRI

D.-E. Meskaldji; M. G. Preti; T. A. Bolton; M.-L. Montandon; C. Rodriguez et al.

NeuroImage: Clinical. 2016.

DOI : 10.1016/j.nicl.2016.10.004.

Microstructure informed tractography: pitfalls and open challenges

A. Daducci; A. Dal Palú; M. Descoteaux; J.-P. Thiran

Frontiers in Neuroscience. 2016.

DOI : 10.3389/fnins.2016.00247.

What lies beneath? Diffusion EAP-based study of brain tissue microstructure

M. Zucchelli; L. Brusini; A. Méndez; A. Daducci; C. Granziera et al.

Medical Image Analysis. 2016.

DOI : 10.1016/j.media.2016.03.008.

Magnetic resonance spectroscopic imaging at superresolution: Overview and perspectives

J. Kasten; A. Klauser; F. Lazeyras; D. Van De Ville

Journal Of Magnetic Resonance. 2016.

DOI : 10.1016/j.jmr.2015.11.003.

Meta-analysis of real-time fMRI neurofeedback studies using individual participant data: How is brain regulation mediated?

K. Emmert; R. Kopel; J. Sulzer; A. B. Bruehl; B. D. Berman et al.

Neuroimage. 2016.

DOI : 10.1016/j.neuroimage.2015.09.042.

3D-Printed Shepp-Logan Phantom as a Real-World Benchmark for MRI

J. A. Kasten; T. Vetterli; F. Lazeyras; D. Van De Ville

Magnetic Resonance In Medicine. 2016.

DOI : 10.1002/mrm.25593.

Altered cerebrovascular reactivity velocity in mild cognitive impairment and Alzheimer's disease

J. Richiardi; A. U. Monsch; T. Haas; F. Barkhof; D. Van De Ville et al.

Neurobiology Of Aging. 2015.

DOI : 10.1016/j.neurobiolaging.2014.07.020.

Improved statistical evaluation of group differences in connectomes by screening-filtering strategy with application to study maturation of brain connections between childhood and adolescence

D. E. Meskaldji; L. Vasung; D. P. R. Romascano; J.-P. Thiran; P. Hagmann et al.

Neuroimage. 2015.

DOI : 10.1016/j.neuroimage.2014.11.059.

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

A. Daducci; E. J. Canales-Rodriguez; H. Zhang; T. B. Dyrby; D. C. Alexander et al.

Neuroimage. 2015.

DOI : 10.1016/j.neuroimage.2014.10.026.

COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography

A. Daducci; A. Dal Palú; A. Lemkaddem; J.-P. Thiran

IEEE Transactions on Medical Imaging. 2015.

DOI : 10.1109/TMI.2014.2352414.

Comparison of anterior cingulate vs. insular cortex as targets for real-time fMRI regulation during pain stimulation

K. Emmert; M. Breimhorst; T. Bauermann; F. Birklein; D. Van De Ville et al.

Frontiers In Behavioral Neuroscience. 2014.

DOI : 10.3389/fnbeh.2014.00350.

Disentangling Dynamic Networks: Separated and Joint Expressions of Functional Connectivity Patterns in Time

N. Leonardi; W. R. Shirer; M. D. Greicius; D. Van De Ville

Human Brain Mapping. 2014.

DOI : 10.1002/hbm.22599.

EEG source imaging of brain states using spatiotemporal regression

A. Custo; S. Vulliemoz; F. Grouiller; D. Van De Ville; C. Michel

Neuroimage. 2014.

DOI : 10.1016/j.neuroimage.2014.04.002.

MBIS: Multivariate Bayesian Image Segmentation tool

O. Esteban; G. Wollny; S. Gorthi; M.-J. Ledesma-Carbayo; J.-P. Thiran et al.

Computer Methods And Programs In Biomedicine. 2014.

DOI : 10.1016/j.cmpb.2014.03.003.

Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge

S. Rueda; S. Fathima; C. L. Knight; M. Yaqub; A. T. Papageorghiou et al.

Ieee Transactions On Medical Imaging. 2014.

DOI : 10.1109/Tmi.2013.2276943.

Rotation-Covariant Texture Learning Using Steerable Riesz Wavelets

A. Depeursinge; A. Foncubierta-Rodriguez; D. Van De Ville; H. Mueller

IEEE Transactions on Image Processing. 2014.

DOI : 10.1109/Tip.2013.2295755.

Self-Navigation with Compressed Sensing for 2D translational Motion Correction in Free-Breathing Coronary MRI: a Feasibility Study

G. Bonanno; G. Puy; Y. Wiaux; R. van Heeswijk; D. Piccini et al.

Plos One. 2014.

DOI : 10.1371/journal.pone.0105523.

Sparse regularization for fiber ODF reconstruction: from the suboptimality of $\ell_2$ and $\ell_1$ priors to $\ell_0$

A. Daducci; D. Van De Ville; J.-P. Thiran; Y. Wiaux

Medical Image Analysis. 2014.

DOI : 10.1016/j.media.2014.01.011.

Dynamic reconfiguration of human brain functional networks through neurofeedback

S. Haller; R. Kopel; P. Jhooti; T. Haas; F. Scharnowski et al.

Neuroimage. 2013.

DOI : 10.1016/j.neuroimage.2013.05.019.

Weighted Shape-Based Averaging With Neighborhood Prior Model for Multiple Atlas Fusion-Based Medical Image Segmentation

S. Gorthi; M. Bach Cuadra; P.-A. Tercier; A. S. Allal; J.-P. Thiran

IEEE Signal Processing Letters. 2013.

DOI : 10.1109/LSP.2013.2279269.

S2LET: A code to perform fast wavelet analysis on the sphere

B. Leistedt; J. McEwen; P. Vandergheynst; Y. Wiaux

Astronomy and Astrophysics. 2013.

DOI : 10.1051/0004-6361/201220729.

Sparsity Averaging for Compressive Imaging

R. Carrillo; J. McEwen; D. Van De Ville; J.-P. Thiran; Y. Wiaux

IEEE Signal Processing Letters. 2013.

DOI : 10.1109/LSP.2013.2259813.

Fast Directional Spatially Localized Spherical Harmonic Transform

Z. Khalid; R. A. Kennedy; S. Durrani; P. Sadeghi; Y. Wiaux et al.

IEEE Transactions on Signal Processing. 2013.

DOI : 10.1109/Tsp.2013.2247601.

STATISTICAL MODELING OF THE EYE FOR MULTIMODAL TREATMENT PLANNING FOR EXTERNAL BEAM RADIOTHERAPY OF INTRAOCULAR TUMORS

M. RUEEGSEGGER; M. Bach Cuadra; A. Pica; C. AMSTUTZ; T. RUDOLPH et al.

International Journal of Radiation Oncology, Biology, Physics.. 2012.

DOI : 10.1016/j.ijrobp.2012.05.040.

How to Measure Cortical Folding from MR Images: a Step-by-Step Tutorial to Compute Local Gyrification Index

M. Schaer; M. Bach Cuadra; N. Schmansky; B. Fischl; J.-P. Thiran et al.

Journal of Visualized Experiments. 2012.

DOI : 10.3791/3417.

Regional cortical volumes and congenital heart disease: a MRI study in 22q11.2 deletion syndrome

M. Schaer; B. Glaser; M.-C. Ottet; M. Schneider; M. Bach Cuadra et al.

Journal of Neurodevelopmental Disorders. 2010.

DOI : 10.1007/s11689-010-9061-4.

SURE-Based Non-Local Means

D. Van De Ville; M. Kocher

Ieee Signal Processing Letters. 2009.

DOI : 10.1109/LSP.2009.2027669.

Congenital heart disease affects local gyrification in 22q11.2 deletion syndrome

M. Schaer; B. Glaser; M. Bach Cuadra; M. Debbane; J.-P. Thiran et al.

Developmental Medicine and Child Neurology. 2009.

DOI : 10.1111/j.1469-8749.2009.03281.x.

Exporting Contours to DICOM-RT Structure Set

S. Gorthi; M. Bach Cuadra; J.-P. Thiran

Insight Journal. 2009.

Segmentation of head and neck lymph node regions for radiotherapy planning, using active contour based atlas registration

S. Gorthi; V. Duay; N. Houhou; M. Bach Cuadra; U. Schick et al.

IEEE Journal of selected topics in signal processing. 2009.

DOI : 10.1109/JSTSP.2008.2011104.

A Multimodal Evaluation Method for Medical Image Segmentation

R. Cardenes; R. de Luis Garcia; M. Bach Cuadra

Computerized Medical Imaging and Graphics. 2009.

DOI : 10.1016/j.cmpb.2009.04.009.

A Surface-based approach to Quantify Local Cortical Gyrification

M. Schaer; M. Bach Cuadra; L. Tamarit; F. Lazeyras; S. Eliez et al.

IEEE Transactions on Medical Imaging. 2008.

DOI : 10.1109/TMI.2007.903576.

Papiers de conférences

Shallow vs deep learning architectures for white matter lesion segmentation in the early stages of multiple sclerosis

F. La Rosa; M. J. Fartaria; T. Kober; J. Richiardi; C. Granziera et al.

2018-09-10. BrainLes Workshop, MICCAI 2018 , Granada, Spain , September 16, 2018.

DOI : 10.1007/978-3-030-11723-8_14.

Predicting Individual Scores From Resting State fMRI Using Partial Least Squares Regression

D.-E. Meskaldji; M. G. Preti; T. Bolton; M.-L. Montandon; C. Rodriguez et al.

2016. IEEE 13th International Symposium on Biomedical Imaging (ISBI) , Prague, Czech Republic . p. 1311-1314.

DOI : 10.1109/ISBI.2016.7493508.

Eigenmaps Of Dynamic Functional Connectivity: Voxel-Level Dominant Patterns Through Eigenvector Centrality

M. G. Preti; D. Van De Ville

2016. IEEE 13th International Symposium on Biomedical Imaging (ISBI) , Prague, Czech Republic . p. 988-991.

DOI : 10.1109/ISBI.2016.7493431.

Statistical methods for comparing brain connectomes at different scales

D.-E. Meskaldji; S. Morgenthaler; D. Van De Ville

2015. Conference on Wavelets and Sparsity XVI . p. 95971L.

DOI : 10.1117/12.2189847.

Simulation-based evaluation of susceptibility distortion correction methods in diffusion MRI for connectivity analysis

O. Esteban; A. Daducci; E. Caruyer; K. O'Brien; L. Carbayo et al.

2014. IEEE 11th International Symposium on Biomedical Imaging - From Nano to Macro (ISBI) , Beijing, China , April 29 - May 2, 2014.

l0-deconvolution for compressive diffusion MRI

A. Daducci; A. Auría Rasclosa; J.-P. Thiran; Y. Wiaux

2013. BASP Frontiers 2013 , Villars-sur-ollon , January 27 - February 1, 2013.

A convex optimization approach for image recovery from nonlinear measurements in optical interferometry

A. Auría Rasclosa; R. Carrillo; Y. Wiaux

2013. International Biomedical and Astronomical Signal Processing (BASP) Frontiers workshop , Villars-sur-Ollon, Switzerland , January, 2013.

The varying w spread spectrum effect for radio interferometric imaging

L. Wolz; F. Abdalla; R. Carrillo; Y. Wiaux; J. McEwen

2013. International Biomedical and Astronomical Signal Processing (BASP) Frontiers workshop , Villars-sur-Ollon, Switzerland , January, 2013.

Sparsity averaging for radio-interferometric imaging

R. Carrillo; J. McEwen; Y. Wiaux

2013. International Biomedical and Astronomical Signal Processing (BASP) Frontiers workshop , Villars-sur-Ollon, Switzerland , January, 2013.

The importance of priors for l2 regularization and total variation methods in quantitative susceptibility mapping

D. Khabipova; J. P. Marques; G. Puy; R. Gruetter; Y. Wiaux

2012. 29th Annual Meeting of the European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) , Lisbon, Portugal , October 4-6, 2012. p. 64.

DOI : 10.1007/s10334-012-0321-z.

About the performance of multi-dimensional radial self-navigation incorporating compressed sensing for free-breathing coronary MRI

G. V. Bonanno; G. Puy; Y. Wiaux; R. van Heeswijk; M. Stuber

2012. International Society for Magnetic Resonance in Medicine (ISMRM) conference , Melbourne , May 5-11, 2012.

Multi-dimensional radial self-navigation with non-linear reconstruction for free-breathing coronary MRI

G. V. Bonanno; G. Puy; Y. Wiaux; R. van Heeswijk; M. Stuber

2011. 28th Annual Scientific Meeting of the European Society for Magnetic Resonance in Medecine and Biology , Leipzig , October 6-8, 2011. p. 267-268.

DOI : 10.1007/s10334-011-0267-6.

Spread Spectrum for Universal Compressive Sampling

G. Puy; P. Vandergheynst; R. Gribonval; Y. Wiaux

2011. 4th Workshop on Signal Processing with Adaptive Sparse Structured Representations , Edinburgh , June 27-30, 2011. p. 50.

Matching Pursuit Iterative Dipole Based Filter of Background Fields in Phase Imaging

J. P. Marques; Y. Wiaux; R. Gruetter

2011. International Society for Magnetic Resonance in Medicine (ISMRM) conference , Montreal, Canada , May 7-13, 2011. p. 2664.

Implications for compressed sensing of a new sampling theorem on the sphere

J. McEwen; G. Puy; J.-P. Thiran; P. Vandergheynst; D. Van De Ville et al.

2011. 4th Workshop on Signal Processing with Adaptive Sparse Structured Representations , Edinburgh, Scotland , 27-30 June, 2011. p. 45.

Harmonic analysis of spherical sampling in diffusion MRI

A. Daducci; J. McEwen; D. Van De Ville; J.-P. Thiran; Y. Wiaux

2011. 19th International Society for Magnetic Resonance in Medicine (ISMRM) conference , Montreal, Quebec, Canada , May 7-13, 2011. p. 3929.

Comparison of Energy Minimization Methods for 3-D Brain Tissue Classification

S. Gorthi; J.-P. Thiran; M. Bach Cuadra

2011. IEEE International Conference on Image Processing , Brussels, Belgium, , September 11-14, 2011. p. 57-60.

An Efficient Segmentation Method for Ultrasound Images based on a Semi-supervised Approach and Patch-based Features

A.-R. Ciurte; N. Houhou; S. Nedevschi; A. Pica; F. Munier et al.

2011. 8th IEEE International Symposium on Biomedical Imaging , Chicago, Illinois, USA , March 30th - April 2nd, 2011.

Sampling theorems and compressive sensing on the sphere

J. McEwen; G. Puy; J.-P. Thiran; P. Vandergheynst; D. Van De Ville et al.

2011. Conference on Wavelets and Sparsity XIV , San Diego, CA , August 21-25, 2011.

DOI : 10.1117/12.893481.

Accelerated MR imaging with spread spectrum encoding

G. Puy; J. Marques; R. Gruetter; J.-P. Thiran; D. Van de Ville et al.

2011. International Society for Magnetic Resonance in Medicine (ISMRM) conference , Montreal , May 7-13, 2011. p. 2808.

Spread Spectrum For Compressed Sensing Techniques In Magnetic Resonance Imaging

Y. Wiaux; G. Puy; R. Gruetter; J.-P. Thiran; D. Van De Ville et al.

2010. 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro , Rotterdam, NETHERLANDS , Apr 14-17, 2010. p. 756-759.

Multi-Atlas based Segmentation of Head and Neck CT Images using Active Contour Framework

S. Gorthi; M. Bach Cuadra; U. Schick; P.-A. Tercier; A. S. Allal et al.

2010. MICCAI workshop on 3D Segmentation Challenge for Clinical Applications , Beijing, China , September 20-24, 2010.

Spread spectrum for compressed sensing techniques in magnetic resonance imaging

Y. Wiaux; G. Puy; R. Gruetter; J.-P. Thiran; D. Van De Ville et al.

2010. IEEE International Symp. on Biomedical Imaging: From Nano to macro (ISBI) , Rotterdam , April 14-17, 2010. p. 756-759.

DOI : 10.1109/ISBI.2010.5490066.

Spread spectrum for interferometric and magnetic resonance imaging

G. Puy; Y. Wiaux; R. Gruetter; J.-P. Thiran; D. Van De Ville et al.

2010. IEEE International Conference on Acoustic, Speech, and Signal Processing (ICASSP) , Dallas , March 14–19, 2010. p. 2802-2805.

DOI : 10.1109/ICASSP.2010.5496198.

Brain tissue segmentation of fetal MR images

M. Bach Cuadra; M. Schaer; A. Andre; L. Guibaud; S. Eliez et al.

2009. Workshop on Image Analysis for Developing Brain, in 12th International Conference on Medical Image Computing and Computer Assisted Intervention , Londond, UK , September 20-24, 2009.

Posters

A NEW APPROACH FOR CEREBELLO-THALAMIC MOTOR NETWORK EVALUATION IN ASYMPTOMATIC PREMUTATION CARRIERS AT RISK FOR FXTAS

G. Battistella; N. Ghazaleh; E. Fornari; E. Najdenovska; M. Bach Cuadra et al.

Human Brain Mapping, Seattle, USA, June 16-20, 2013.

A pipeline approach with spatial information for segmenting multiple sclerosis lesions on brain magnetic resonance imaging

M. Cabezas Grebol; M. Bach Cuadra; A. Oliver; X. Lladó; J. Freixenet et al.

5th Joint triennial congress of the European and Americas committees for treatment and research in multiple sclerosis, Amsterdam, The Netherlands, October 19-22, 2011.

Présentations

Comparison of tissue classification models for automatic brain MR segmentation

D. Ribes; B. Mortamet; M. Bach Cuadra; C. Jack; R. Meuli et al.

19th Annual Meeting and Exhibition ISMRM, Montreal, Quebec, Canada, May 7-13, 2011.

3D Ultrasound Tumor Segmentation and Fusion with CT for Stereotactic Radiation Therapy Planning of Retinoblastoma

A. Pica; F. I. Karahanoglu; A.-R. Ciurte; S. Gorthi; A. Balmer et al.

10th Biennial Congress and Exhibition of the International Stereotactic Radio surgery Society, Paris, France, May 8-12, 2011.

Projets d'étudiants

Parallel Spread Spectrum MR Imaging

M. H. Izadi

2010.